1. A JR is an academic session in which we go through selected article summaries over 60-75 min.
2. It takes place every Monday and Thursday via our JR Discord channel โ see calendar.
3. Its purpose is to:
- Understand the main messages from the summarized articles.
- Recall pivotal concepts pertinent to our clinical practice.
- Train clinical reasoning by connecting key concepts to real-life scenarios.
4. The articles are chosen during the session from a curated, labeled, and codified list of remarkable summarized articles.
5. We take interactive and pedagogic notes in a shared document, using visual aids, highlighting, underlining, arrows, and conceptual links to connect ideas and facilitate understanding.
6. For each session, we create RECAP key points and publish them on our website.
7. In the following session, we briefly recall the previous JRโs RECAP to reinforce learning through retrieval practice.
๐๐๐พ-S ๐ฐ ๐๐๐ผ๐ผ๐๐พ แดฎแดผ scope ๐ฐ Y, J, C โ T โ N โ t โ P I C O:
year (Y), journal (J), country (C) โ type of study (T) โ number of patients/sample (N) โ time (t) โpopulation (P), intervention (I), comparison (C), outcome (O, OC).
โก๏ธ = cardiac arrest, ๐ค = analysis, ๐จ = flow, ๐ = arrhythmia, ๐ฃ = suggestion(s), ๐ฉธ = blood = hematology, ๐ชฒ = infections, ๐ง = brain, ๐ซ = heart, ๐ซ = lungs, ๐ซ๐ฝ = abdomen = abdominal, โพ๏ธ = kidneys = renal, โธ = liver = hepatic, โฐ = pressure, ๐ช๐ฝ = muscle, โญ๏ธ = circulation, ๐ฅ = inflammation, โ = recommendation(s), โ = increase, โ = decrease, โ๏ธ = improve, โ๏ธ = worsen, ๐๐ซ = exclusion, ๐๐ก = inclusion, CIpxs = critically ill patients, DX = diagnosis, h_LOS = Hospital length of stay, icu_LOS = ICU length of stay, inc_ = incident, MA = metaanalysis, mc = multicentric, MM = mortality, MM90 = mortality at 90 days, pOC = primary outcome(s), pxs = patients, RCT = randomized controlled trial, sOC = secondary outcome(s), sr = systematic review, SS = survival, w_ = with, wo_ = without, yo = years old
Complete glossary here.
โณ TIME MANAGEMENT
01:03:09
Round: 7 01:45:77 Comments
Round: 6 27:52:42 Wrap-up
Round: 5 17:56:59 Interpretation
Round: 4 04:09:25 Reading + notes
Round: 3 04:28:50 ART selection
Round: 2 01:07:46 Comments
Round: 1 05:49:28 Past JR
2025 NEJMc - Real-World Data on Helicobacter pylori TTO Success (Clin Gastroenterol Hepatol).pdf
Codified by YAPG
Glossary: ATB = antibiotic, HP = Helicobacter pylori, INF = infection, OCAM = PPI (omeprazol, etc.) โ clarithro โ amoxi โ metro, PBMT-14 = PPI, bismuth, metronidazole, and tetracycline, PPI = proton-pump inhibitor
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2025, CG&H, USA โ OBS_cohort_real-world โ 25k โ 2y (2000-2022) โ P I C O:
- ๐ ฟ: pxs w_HP
- ๐ ธ: comparison of regimens
- ๐ ฒ: NA
- ๐ พ: pOC = efficacy | sOC = frequency of use
3. EVIDENCE.
a. TTO is complicated by 2 problems:
i. โ rates of community ATB resistance
ii. No data on resistance patterns for HP
b. GL โฉ 2017, reviewed 2024 โฉ PBMT-14
c. Other regimens are still used
4. METHODS.
- Completed DIETARY INTAKE ASSESSMENTS โฉ SELF-REPORTED (2-4y)
- Levels of intake โฉ subgroups
- 11k w_dementia
5. RESULTS.
a. 17 โ regimens for INITIAL INF, the 3 most EFFECTIVE:
i. OCAM โถ๏ธ 90%
ii. PBMT-14 โถ๏ธ 88%
iii. OCA โถ๏ธ 87%
b. Stable EFFICACY of the 3 regimens, through 20y of study.
c. Salvage regimens โฉ LESS EFFECTIVE
i. Particularly, IF duplicated previous regimens.
ii. PBMT-14 = best โถ๏ธ 69%
d. Prior use of MACROLIDES โ METRONIDAZOL โฉ >3y โถ๏ธ โ SUCESS RATES using clarithromycin โ metronidazole
6. RATIONALE.
a. Amoxi regimens still work well, despite not 1st line TTO option.
b. Caution โฉ study done in Nothern California โ applies to other communities ๐ค โ
c. MAIN LESSION โฉ carefully query pxs (PREVIOUS ATB use) before constructing a regimen.
d. Multiple drug exposure โฉ perform HP susceptibility testing.
Thursday, April 9, 2026 at 18:15:02 in BE
AS, MASP, HIBN, AAQC
โณ TIME MANAGEMENT
42:16:57
Round: 6 02:09:52 Comments
Round: 5 15:54:71 Wrap-up
Round: 4 09:28:65 Interpretation
Round: 3 03:33:02 Reading + notes
Round: 2 04:28:54 ART selection
Round: 1 06:42:11 Past JR
2026 NEJMc - Can Coffee and Tea Prevent Dementia (JAMA).pdf
Codified by YAPG
Glossary: HCP = healthcare providers, Q = quartiles
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2026, JAMA, USA โ obs, long, 2 cohorts โ 130k HCP โ 40y โ P I C O:
- ๐ ฟ: HCP
- ๐ ธ: caffeinated coffee, decaffeinated coffee, tea
- ๐ ฒ: NA
- ๐ พ: pOC = dementia prevention
3. EVIDENCE.
a. Short-term cognitive effect โฉ โ๏ธ focus + โ๏ธ alertness
b. OBS โฉ possible long-term benefit โถ๏ธ โr DEMENTIA
4. METHODS.
- Completed DIETARY INTAKE ASSESSMENTS โฉ SELF-REPORTED (2-4y)
- Levels of intake โฉ subgroups
- 11k w_dementia
5. RESULTS.
a. โ 2 Q โฉ median caffeinated โ๏ธ = <1/2 cup daily
b. โ 2 Q โฉ median caffeinated โ๏ธ:
i. 2,5-4,5 cups daily โ
ii. 1 - 2,5 cups daily โ๏ธ
c. Social โ clinical variables ADJUSTED:
i. Caffeinated โ๏ธ โถ๏ธ โโ2Qโ (โr dementia) ๐ โโ2Qโ
d. Tea โถ๏ธ โr dementia EVEN w_only 0.07 โ๏ธ daily.
e. Decaffeinated NOT ASSOCIATED w_โr dementia.
6. RATIONALE.
a. caution
b. Self-reported intake + residual confounding
c. Caffeine might be NEUROPROTECTIVE.
Monday, April 6, 2026 at 18:10:24 in BE
MG, EQO, AHO, MASP, HIBN, AAQC
โณ TIME MANAGEMENT
28:12:44
Round: 7 00:52:82 Comments
Round: 6 10:34:69 Wrap-up
Round: 5 06:22:19 Interpretation
Round: 4 00:05:81 Interpretation
Round: 3 03:10:71 Reading + notes
Round: 2 02:48:35 ART selection
Round: 1 04:17:84 Past JR
Thursday, April 16, 2026 at 18:10:02 in BE
LH, MASP, AAQC
2026 NEJMc - A New Noninvasive Testing Strategy P. jirovecii pneumonia. (Open Forum Infect Dis)
Codified by ๐๐๐ผ๐ผ๐๐พ แดฎแดผ (YAPG)
Glossary: BAL-PCR = bronchoalveolar lavage PCR testing, DX = diagnosis, JPJ = Pneumocystis jirovecii, โ supression = immunosupression
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2026, OFID, ? โ retro, single center โ 114 โ ? โ P I C O:
- ๐ ฟ: pxs w_suspected JPJ + non-HIV โ supression
- ๐ ธ: ร-D-glucan, oral wash PCR or both
- ๐ ฒ: bronchoalveolar lavage PCR testing
- ๐ พ: pOC = DX
3. EVIDENCE.
a. PJP DX wo_BAL is challenging due to the limitations of tests of:
i. sputum
ii. serum
b. Combining both NON-INVASIVE to โ๏ธ DX accuracy โฉ MAKES SENSE
4. METHODS.
a. Oral wash PCR โฉ vigorous gargling of saline for 30s
5. RESULTS.
a. PJP โฉ 15/114 pxs โถ๏ธ symptoms + imaging + BAL
b. ร-D-glucan:
i. โ 14/15 PJP cases (S 93%)
ii. false โ 13/99 cases wo_PJP.
c. Oral wash PCR:
i. 47 pxs
ii. 11 DX w_PJP
iii. โ 11 PJP cases
iv. false โ 4/36 nonPJP
d. Both:
i. 1. โ 10pxs, all w_PJP
ii. both โ โฉ PJP ruled out
6. RATIONALE.
a. This combination appears DECISIVE
b. Px selection would be an issue โฉ only a subset had โoral wash PCRโ
c. Check w_your local laboratory for the tests available.
7. SOURCE: Falcรณ-Roget A, et al. Combined serum (1,3)-ฮฒ-D-glucan and oral wash PCR as a noninvasive diagnostic strategy for early detection of Pneumocystis jirovecii pneumonia: An observational retrospective study. Open Forum Infect Dis 2026 Feb; 13:ofag033. DOI: 10.1093/ofid/ofag033.
โณ TIME MANAGEMENT
46:34:63
Round: 7 02:03:28 Comments
Round: 6 23:07:23 Wrap-up
Round: 5 08:38:45 Interpretation
Round: 4 02:57:45 REading + notes
Round: 3 07:39:86 ART selection
Round: 2 00:42:01 Comments
Round: 1 01:26:32 Past JR (+5min)
2025 NEJMc - Phosphatidylethanol Can Inform the DX SLD. (J Hepatol + Lancet GH).pdf
Codified by YAPG
Glossary: -ol = alcohol, AF = atrial fibrillation, ALD = alcohol-associated liver disease, ARDS = acute respiratory distress syndrome, CA = cancer, GE = gastroenterology, JH = Journal of Hepatology, MASLD = metabolic-associated steatotic liver disease, MetALD = metabolic and alcohol-associated liver disease, SLD = steatotic liver disease
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2025, JH, USA โ obs, cross-sec โ ~400 โ ? โ P I C O:
- ๐ ฟ: overweight/obesity + SLD
- ๐ ธ: phosphatidylethanol
- ๐ ฒ: NA
- ๐ พ: pOC = DX reclassification
3. ๐๐๐พ BS ๐ฐ 2025, LANCET GH, DK โ ฮฉ pros, cohort โ ~2000 โ ? โ P I C O:
- ๐ ฟ: -ol consumption โ metabolic DYSF wo_โโโ -ol use
- ๐ ธ: phosphatidylethanol
- ๐ ฒ: NA
- ๐ พ: pOC = DX reclassification
4. EVIDENCE.
a. MASLD ๐ ALD depends โฉ ACCURACY โถ๏ธ self-reported alcohol use
b. Phosphatidylethanol โฉ biomarker of recent -ol use (1-4 weeks)
5. METHODS.
- Correspondence: ๐ ธ ๐ self-reported -ol intake
- Then assessed to reclassify the DX.
- Steatotic liver disease was categorized (in both studies) on either:
> MASLD
> ALD
> MetALD
- Cutoffs:
> light ๐ฐ ๐ ธ <25 ng/mL
> moderate ๐ฐ ๐ ธ 25-200 ng/mL
> heavy ๐ฐ ๐ ธ >200 ng/mL
6. RESULTS.
a. US study โถ๏ธ MASLD โฉ 95% โ 16%:
i. 13% MetALD
ii. 3% ALD
b. DK study โถ๏ธ MASLD โฉ 70% โ 39%:
i. 31% MetALD
ii. 8% ALD
iii. Reclassification w_ALD โ MetALD โฉ rare (<1%)
7. RATIONALE.
a. ๐ ธ helps:
i. DX + TTO
ii. classifying SLD
b. There is room for error โฉ due to 1-4-week window
c. Never use ๐ ธ IN ISOLATION โถ๏ธ ALWAYS w_other factors (careful history)
8. SOURCES.
a. Tavaglione F, et al. Clinical utility of phosphatidylethanol to detect underreported alcohol use and enhance steatotic liver disease subclassification. J Hepatol 2025 Jun
13; [e-pub]. DOI: 10.1016/j.jhep.2025.05.030.
b. Torp N, et al. Phosphatidylethanol and self-reported alcohol intake to subclassify in individuals at risk of steatotic liver disease: An analysis of data from a prospective
cohort study. Lancet Gastroenterol Hepatol 2025 Sep 10; [e-pub]. DOI: 10.1016/S2468-1253(25)00187-6.
Monday, April 13, 2026 at 18:10:09 in BE
MG, AS, AHO, MASP, HIBN, AAQC
Thursday, April 30, 2026 at 18:00:36 in BE
TGA, HIBN, MASP, AAQC
2025 NEJMc - Ceftriaxone for Patients Hospitalized w_Pneumonia, One Gram or Two (J Antimicrob Chemother).pdf
Codified by ๐๐๐ผ๐ผ๐๐พ แดฎแดผ (TGA)
Glossary: CAP = community acquired pneumonia
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2025, JAC, JP โ retro_cohor โ 470k โ 7d โ P I C O:
- ๐
ฟ: CAP
- ๐
ธ: 2g ceftriaxone
- ๐
ฒ: 1g ceftriaxone
- ๐
พ: pOC = MM30
3. EVIDENCE
a. 2019 GL โฉ ATS + IDSA: 1-2g ceftriaxone for H+ pxs w_CAP, wo_precise advice about DOSING
4. METHODS.
- 55% โ๏ธ
- weight ~50Kg
- 63% 2g = ๐
ธ
- 37% 1g = ๐
ฒ
5. RESULTS
a. MM30 = NO DIFFERENCES = 4,5% overall
b. s_CAP 2g โฉ โMM30 (17% ๐ 20%)
6. RATIONALE.
a. Cannot be GENERALIZABLE to Western natios (e.g. US)
i. 40% are obese
ii. Few <50Kg
b. Georgeโs hospital โฉ 2g q12h for nonmeningeal INF (โฅ120Kg)
c. Georgeโs practice โฉ 2g daily in non-obese w_CAP. (regardless of severity)
d. Rather than BASAL GANGLIA, PD is likely a whole-brain action network.
7. SOURCE: Taniguchi J, Aso S, Matsui H, Fushimi K, Yasunaga H. Outcomes of ceftriaxone 2โ
g versus 1โ
g daily in hospitalized patients with pneumonia: a nationwide retrospective cohort study. J Antimicrob Chemother. 2025;80(8):2194-2202. doi:10.1093/jac/dkaf189
โณ TIME MANAGEMENT
33:37:12
Round: 6 00:36:43 Comments
Round: 5 14:34:96 Wrap-up
Round: 4 05:23:99 Interpretation
Round: 3 03:29:88 Reading + notes
Round: 2 05:03:64 ART selection
Round: 1 04:28:20 Past JR
2025 CC - Reconsidering the urea-to-creatinine ratio as a signal of muscle catabolism in patients with cirrhosis (Oussalah) (ma).pdf
Codified by ๐๐๐ผ๐ผ๐๐พ แดฎแดผ (TGA)
Glossary: AA = aminoacid, ACLD = acute on CLD, AUR = ammonia to urea ratio, CI = critically ill, CLD = chronic liver disease, CREA = creatinine, giBLEED = gastrointestinal bleeding, HRS = hepatorenal syndrome, imp = impaired, ma = matters arising, MECHS = mechanisms, N = nitrogen, R = research = original, sr = systematic review, UCR = urea-to-creatinine ratio, โ = so = therefore
1. UREA issues
a. Portal hypertension โ hepatocelualr DYS โถ๏ธ alter N METABOLISM (โUREAGENESIS efficiency)
b. Ammonia (intestines) โ urea (water-soluble, excreted in the urine) โถ๏ธ โธ
i. Both are indicators of the same pathway
ii. They reflect urea-cycle efficiency
c. Cirrhosis perturbs this pathway:
i. โ vascular R โ portosystemic shunts ๐ฐ imp โธ clearance โฉ โ ammonia (systemically)
ii. imp hepatocellular function ๐ฐ โ urea-cycle โฉ โ urea (for a given N load)
d. Combined effect โถ๏ธ โ ammonia โ โ urea
e. CLINICALLY โถ๏ธ pxs have โ โ โnormalโ UCR โฉ limited โธ capacity to convert ammonia to urea.
f. AUR > 1,53 mg/g โ portal hypertension
i. Complications can modify it.
ii. giBLEED (e.g. variceal) โฉ ยซโN load โ portal โญ๏ธยป due to ๐ซ๐ฝHb โdigestion + reabsorptionโ
iii. N input โถ๏ธ โ ureagenesis + โ urea (not โ to ๐ช๐ฝ catabolism)
iv. โUCR ๐ฐ exogenous N influx + prerenal dynamics (not AA use โ protein breakdown)
2. INCLUSION of these pxs in pooled ๐ค wo_ stratification = conflating distinct MECHS + limits generalizability.
3. SOLUTIONS
a. Studies should:
i. PROSPECTIVELY stratify
1. cirrhosis
2. portal hypertension
ii. UCR reported
b. โพ๏ธ assessment in cirrhosis โฉ internationally validated approaches OVER CREA-only:
i. cystating C-based equations
ii. measured CREA clearance
c. In NUTRITIONAL ๐
ธ
i. plasma ammonia
ii. plama N balance
iii. Both **distinguish** imp ureageneis **from** protein intake.
iv. In cirrhosis โฉ โ UCR + โ ammonia = urea-cycle oveload (not excessive catabolism) โถ๏ธ โ: ยซammonia โ strategiesยป ARE THE PRIORITY (OVER reflective protein restriction)
v. Avoid protein RESTRICTION in โธ encephalopathy (GL) โฉ 1,2 - 1,5 g/Kg/day to **preserve** N balance + **prevent** sarcopenia
d. giBLEED โ preโพ๏ธ states
i. UCR should prompt TARGETED DX evaluation.
ii. Do not interpret as a STAND-ALONE SIGNAL of ๐ช๐ฝ proteolysis
4. SOURCE: Oussalah A, Haghnejad V, Audouy A, et al. Reconsidering the urea-to-creatinine ratio as a signal of muscle catabolism in patients with cirrhosis. Crit Care. 2025;29(1):428. Published 2025 Oct 8. doi:10.1186/s13054-025-05703-1.
Thursday, April 27, 2026 at 18:00:36 in BE
LH, TGA, MASP, AAQC
โณ TIME MANAGEMENT
01:20:58
Round: 3 00:36:85 Comments.
Round: 2 49:20:47 Abbreviations update
Round: 1 31:01:59 Past JR recap
2025 CC - Reconsidering the urea-to-creatinine ratio as a signal of muscle catabolism in patients with cirrhosis (Oussalah) (ma).pdf
Codified by ๐๐๐ผ๐ผ๐๐พ แดฎแดผ (TGA)
Glossary: AA = aminoacid, ACLD = acute on CLD, AUR = ammonia to urea ratio, CI = critically ill, CLD = chronic liver disease, CREA = creatinine, giBLEED = gastrointestinal bleeding, HRS = hepatorenal syndrome, imp = impaired, ma = matters arising, MECHS = mechanisms, N = nitrogen, R = research = original, sr = systematic review, UCR = urea-to-creatinine ratio, โ = so = therefore
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ma โถ๏ธ 2025, CC, FR โ ma โ Paulus et al. (MA, UTC CC 2025) โ โ
3. R โถ๏ธ 2025, CC, NL โ srMA โ 47/1450 โ Sep 3, 2024 โ P I C O:
- ๐
ฟ: CI pxs
- ๐
ธ: UCR value (at least 1)
- ๐
ฒ: NA
- ๐
พ: pOC = protein catabolism
4. CAUTION. Cirrhosis โ portal hypertension:
a. This type of admissions are frequent โฉ 2-4,5% (national cohorts + sr)
b. In ICU ():
i. 20% = cirrhosis โฉ decompensation + ACLD + variceal hemorrhages + HRS
ii. 1/3 = CLD (high-dependency)
c. Both components of UCR are influenced by OTHER processes:
i. ureagenesis
ii. sarcopenia
d. IF this subgroup is taken in the pooled ๐ค โ BIAS (inflatingโattenuating: โ ).
5. CREA issues
a. Cirrhosis โฉ ๐ช๐ฝ homeostasis
b. Sarcopenia:
i. 14-55% in cirrhosis
ii. โ: โ skeletal ๐ช๐ฝ
c. CLD MECHS โฉ โ CREA (not โGFR)
i. imp โธ creatine synthesis
ii. โ fractional tubular secretion
iii. underestimation in โbilirrubinemia
iv. Combined effect โฉ โshift in CREA for any GFR
v. โ: โUCR in cirrhosis REFLECTS โCREA production (not โ protein catabolism)
6. UREA issues.
a. Portal hypertension โ hepatocelualr DYS โถ๏ธ alter N METABOLISM (โUREAGENESIS efficiency)
b. Ammonia (intestines) โ urea (water-soluble, excreted in the urine) โถ๏ธ โธbrain action network.
i. Both are indicators of the same pathway
ii. They reflect urea-cycle efficiency
c. Cirrhosis perturbs this pathway:
i. โ vascular R โ portosystemic shunts ๐ฐ imp โธ clearance โฉ โ ammonia (systemically)
ii. imp hepatocellular function ๐ฐ โ urea-cycle โฉ โ urea (for a given N load)
d. Combined effect โถ๏ธ โ ammonia โ โ urea
e. CLINICALLY โถ๏ธ pxs have โ โ โnormalโ UCR โฉ limited โธ capacity to convert ammonia to urea.
f. AUR > 1,53 mg/g โ portal hypertension
i. Complications can modify it.
ii. giBLEED (e.g. variceal) โฉ ยซโN load โ portal โญ๏ธยป due to ๐ซ๐ฝHb โdigestion + reabsorptionโ
iii. N input โถ๏ธ โ ureagenesis + โ urea (not โ to ๐ช๐ฝ catabolism)
iv. โUCR ๐ฐ exogenous N influx + prerenal dynamics (not AA use โ protein breakdown)
7. INCLUSION of these pxs in pooled ๐ค wo_ stratification = conflating distinct MECHS + limits generalizability.
8. SOLUTIONS
a. Studies should:
i. PROSPECTIVELY stratify
1. cirrhosis
2. portal hypertension
ii. UCR reported
b. โพ๏ธ assessment in cirrhosis โฉ internationally validated approaches OVER CREA-only:
i. cystating C-based equations
ii. measured CREA clearance
c. In NUTRITIONAL ๐ ธ
i. plasma ammonia
ii. plama N balance
iii. Both **distinguish** imp ureageneis **from** protein intake.
iv. In cirrhosis โฉ โ UCR + โ ammonia = urea-cycle oveload (not excessive catabolism) โถ๏ธ โ: ยซammonia โ strategiesยป ARE THE PRIORITY (OVER reflective protein restriction)
v. Avoid protein RESTRICTION in โธ encephalopathy (GL) โฉ 1,2 - 1,5 g/Kg/day to preserve N balance + prevent sarcopenia
d. giBLEED โ preโพ๏ธ states
i. UCR should prompt TARGETED DX evaluation.
ii. Do not interpret as a STAND-ALONE SIGNAL of ๐ช๐ฝ proteolysis
9. SOURCE: Oussalah A, Haghnejad V, Audouy A, et al. Reconsidering the urea-to-creatinine ratio as a signal of muscle catabolism in patients with cirrhosis. Crit Care. 2025;29(1):428. Published 2025 Oct 8. doi:10.1186/s13054-025-05703-1.
Thursday, April 23, 2026 at 18:10:36 in BE
LH, TGA, MASP, YAPG,HIBN, AAQC
โณ TIME MANAGEMENT
01:20:58
Round: 3 00:36:85 Comments.
Round: 2 49:20:47 Abbreviations updateRound: 1 31:01:59 Past JR recap
2026 NEJMc - Reconceiving Parkinsonโs Disease as Whole-Brain Action Netw. Disord. (Nature).pdf
Codified by YAPG
Glossary: somato-cognitive action network, PD = Parkinsonโs disease, TTO = treatment(s), US = ultrasound, ๐ง = brain
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2026, NATURE, โ โ obs โ 863 โ โ โ P I C O:
- ๐ ฟ: PD pxs
- ๐ ธ: imaging: SCAN
- ๐ ฒ: NA
- ๐ พ: pOC = impairment
3. EVIDENCE.
a. Dopaminergic degeneration: basal ganglia โฉ motor โ nonmotor PATHWAYS
b. Explains TREMOR โ RIGIDITY
c. Cognitive โ motivational โ autonomic FEATURES โฉ NOT EXPLAINED
d. Is a broader, integrated ๐ง network the problem?
4. METHODS.
- SCAN ๐ฐ recently described. Network linking the control of:
> movement
> cognition
> motivation
> autonomic
5. RESULTS.
a. PD โถ๏ธ โ connectivity:
i. SCAN โ subcortical structures
ii. โ โ โ hyperconnectivity โ WORSE motor โ cognitive impairment.
b. Effective TTOs, ALL โ SCAN:
i. levodopa
ii. Deep brain stimulation
iii. transcranial magnetic stimulation
iv. focused US
c. โ normalization of CONNECTIVITY โ โ clinical โ๏ธ
d. Targeting SCAN โถ๏ธ โ๏ธ TTO EFFECTIVENESS for:
i. transcranial magnetic stimulation
ii. focused US
6. RATIONALE.
a. SCAN might underlie PD
b. Current TTO might MODULATE this network.
c. Rather than BASAL GANGLIA, PD is likely a whole-brain action network.
d. SCAN dysfunction ๐ฐ core circuit abnormality.
e. If validated, it will influence:
i. the neuromodulation
ii. how we think about IMAGING BIOMARKERS โฉ personalized therapy.
7. SOURCE: Ren J, et al. Parkinsonโs disease as a somato-cognitive action network disorder.Nature 2026 Feb 4; [e-pub]. DOI: 10.1038/s41586-025-10059-1.
Monday, April 20, 2026 at 18:05:06 in BE
AHO, TGA, MASP, YAPG, AAQC
โณ TIME MANAGEMENT
01:40:51
Round: 13 27:59:21 Comments
Round: 12 16:49:89 Wrap-up 2
Round: 11 00:42:85 Wrap-up 1
Round: 10 06:03:38 Interpretation
Round: 9 02:26:33 Reading + notes
Round: 8 02:16:18 Comments
Round: 7 18:14:10 Wrap-up
Round: 6 09:51:46 Interpretation
Round: 5 02:28:02 Reading + notes
Round: 4 04:17:67 ART Selection
Round: 3 00:32:04 Comments
Round: 2 08:37:45 Last JR
Round: 1 00:33:00 Opening
2026 CC - Phenotype, subphenotype, and endotype in Sโข and ARDS, a new layer of heterogeneity (Zhao) (corr).pdf
Codified by ๐๐๐ผ๐ผ๐๐พ แดฎแดผ (TGA)
Glossary: I2 = heterogeneity, PD = Parkinsonโs disease, POV = point of view, PSE = phenotype, subphenotype, endotype, Sโข = sepsis, SCAN = somato-cognitive action network, SOC = standard of care, TTO = treatment(s), US = ultrasound
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2026, CC, CH โ corr โ NA โ NA โ P I C O:
- ๐
ฟ: CIpxs
- ๐
ธ: USG โ lower limb muscle
- ๐
ฒ: NA
- ๐
พ: pOC = utility
3. ARDS = syndrome โฉ masks BIOLOGICAL I2 ๐ฐ primary obstacle to TTO
4. Studies identify PSE โฉ but THE EFFORTS create new layer of I2
a. IMPEDE rather than enable discarding the โsyndromeโ label.
b. despite inventive cogitation + methodological sophistication
5. PURPOSE
a. Deconstruct heterogeneous clinical syndromes โฉ biological homogeneous + clinical TTO subgroups
b. Facilitate PRECISION medicalโ optimize INDIVDUAL TTO
6. CLASSIFICATIONS
a. Derive from multiple analytical approaches:
i. high-dimensional clinical variables
ii. multi-omics data โฉ integrated analysis of multiple molecular layers (e.g., genomics, transcriptomics, proteomics, metabolomics) to obtain a holistic view of biological systems.
iii. AI-driven deep learning
b. Evidence shows INCOMPLETE CONCORDANCE โ loosely correlate biological phenomena.
c. Question: which type or subtype, if any, represents โtrueโ disease biology?
d. The risk of multiplicity classification โฉ fragmented atlas INSTEAD OF unified map of Sโข + ARDS pathobiology.
7. ACHIEVEMENT
a. RCT โฉ hidden TTO effect obscured in unselected populations.
b. They are retrospective + hypothesis-generating โฉ โ yet to be incorporated in SOC. (intellectually fascinating + mechanistically informative)
c. Solution โฉ to validate prospectively
d. Assumption โฉ the subgroups reflect DISTINCT EXPRESSIONS of a single underlying disease.
e. Sth more unsettling โฉ Sโข โ ARDS ๐ฐ represents a multitude of distinct diseases โ โถ๏ธ โENDEAVOR built on shifting sandsโ.
i. Unique utility โ ID subgroups that responds to a given therapy.
ii. DOES NOT RESOLVE:
1. definition problem
2. question if Sโข is a coherent disease
8. POV
a. PSE โฉ implies complexity of โถ๏ธ pxs โ methodology & taxonomy
b. Instead of DESCRIPTIVE, go for CAUSAL investigation
c. Statistical artifacts ๐ biological realities.
9. SOURCE: Z[hao, L., Zhao, C., Wang, M. *et al.* Phenotype, subphenotype, and endotype in sepsis and ARDS: a new layer of heterogeneity?. Crit Care 30, 173 (2026). https://doi.org/10.1186/s13054-026-06022-9
Thursday, May 14, 2026 at 18:21:36 in BE
TGA, RCH, SLDC, HIBN, AAQC
โณ TIME MANAGEMENT
01:17:25
Round: 7 02:51:40 Comments
Round: 6 27:58:20 Recap
Round: 5 30:54:32 Interpretation
Round: 4 03:56:45 Reading + notes
Round: 3 06:15:83 ART selection
Round: 2 00:34:26 Comments
Round: 1 04:55:17 Past JR
โณ TIME MANAGEMENT
58:48:87
Round: 6 00:43:28 Comments
Round: 5 25:52:54 Wrap-up
Round: 4 15:16:22 Interpretation
Round: 3 04:16:43 Reading + notes
Round: 2 07:13:41 ART selection
Round: 1 05:26:98 Past JR
2026 CC - Ultrasound assessment of muscle atrophy and its association with functional OC in CIpxs (Lin) (srMA).pdf
Codified by ๐๐๐ผ๐ผ๐๐พ แดฎแดผ (TGA)
Glossary: AF = atrial fibrillation, CI pxs = critically ill patients, CT = computed tomography, DEXA = dual-energy X-ray absorptiometry, ICU-AW = ICU-acquired weakness, MRI = magnetic resonance imaging, USG = ultrasound, โ = differences
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2026, CC, TW โ srMA โ 69 โ -Oct 11, 2025 โ P I C O:
- ๐
ฟ: CIpxs
- ๐
ธ: USG โ lower limb muscle
- ๐
ฒ: NA
- ๐
พ: pOC = muscle atrophy monitoring
3. EVIDENCE
a. CIpxs โ skeletal muscle wasting:
i. immobility
ii. systemic inflammation
b. Accuracy ๐ impracticality โฉ cost + radiation + logistics
i. CT
ii. MRI
iii. DEXA
c. USG โฉ bedside + radiation-free + repeatable โ assess:
i. quantitative โ cross-sectional area + muscle tickness
ii. qualitative โ echointensity + pennation angle
4. RESULTS.
a. D7 of ICU admission
i. CROSS-SECTIONAL AREA:
1. Rectus femoris ๐ฐ โ16%
2. Quadriceps ๐ฐ โ 11%
ii.. ECHOINTENSITY โ
iii. PENNATION ANGLE โ
iv. โ โถ๏ธ compositional + architectural **deterioration.**
v. Heterogeneity is โ โ โฉ reflects โ in px characteristics
1. pxs characteristics
2. anatomical landmarks
3. USG technical factors
vi. Limited data โถ๏ธ USG changes โ ICU-AW
b. D1-3 of ICU admission (excluding an outlier)
i. CROSS-SECTIONAL AREA:
1. Rectus femoris ๐ฐ GREATER โ โ โ in ICU-AW
2. Compared to non ICU-AW
5. CONCLUSIONS.
a. USG detects: early, rapid muscle wasting โ concurrent QUALITY degradation.
b. Very low CERTAINTY OF EVIDENCE:
i. Heterogeneity
ii. Methodological limitations
iii. BOTH โฉ hinder clinical translation.
c. Needs clarification of the USG potential clinical utility.
.
6. SOURCE: Lin CC, Lin YJ, Chen CT, Chou HM, Hsu WC. Ultrasound assessment of muscle atrophy and its association with functional outcomes in critically ill patients: a systematic review and meta-analysis. Crit Care. Published online March 31, 2026. doi:10.1186/s13054-025-05825-6
Monday, May 11, 2026 at 18:28:41 in BE
TGA, BAR, RCH, SLDC, ASCA, AAQC
2026 NEJM - Side effects of Radiotherapy (NEJM)
Codified by ๐๐๐ผ๐ผ๐๐พ แดฎแดผ
Glossary: antiDiarr = antidiarrheals, CAD = coronary artery disease, H2B = H2 blockers, PPI = protom pump inhibitors, SE = side effects, โ Hb = anemia, โ N = neutropenia, โ PLT = thrombocytopenia
1. ๐๐๐พ BS โฉ Y, J, C โ T โ N โ t โ P I C O:
2. ๐๐๐พ BS ๐ฐ 2026, NEJM, USA โ r โ NA โ NA โ P I C O:
๐ ฟ: onco pxs w_radiotherapy
3. EVIDENCE.
a. Radiotherapy is a KEY TTO โฉ cancers
b. INNOVATIONS โฉ imaging + radiation delivery โฉ โ๏ธ :
4. REVIEW. Side effect from radiation TTOs:
a. Acute SE
i. ๐ Mucosal.
1. MUCOSITIS โ ESOPHAGITIS โถ๏ธ top_Anest โ nystatin โ analgesics โ sucralfate โ H2B โ PPI โ nutriSupport
iii.๐ซ Gastric
1. GASTRITIS โถ๏ธ H2B โ PPI โ sucralfate โ antiemetics
iv. ๐ฆ Intestinal
1. ENTERITIS โถ๏ธ antiDiarr โ low-residue diet โ somatostatin
2. Acute PROCTITIS โถ๏ธ symp_mm โ antiDiarr
iv. ๐ฉธ Hematologic
1. โN โถ๏ธ G-CSF
2. โHb โถ๏ธ erythropoietin โ transfusion
3. โPLT โถ๏ธ transfusion
v. ๐ฝ Urinary
1. OBSTRUCTIVE โถ๏ธ โพ๏ธ blocker โ NSAIDs
2. IRRITATITVE โถ๏ธ antiMusc โ NSAID โ phenazopyridine
vi. ๐ฉน Cutaneous
1. DERMATITIS โถ๏ธ โfriction โ โ barriers (hydrogel, silicone) โ topSteroids โ topMoisturizers โ silver dressing โ silver sulfadiazine
b. Subacute โ late SE
i. ๐ง Central nervous system
1. NEUROCOGNITIVE defects โถ๏ธ neurostimulants โ memantine โ donepezil
2. NECROSIS โถ๏ธ steroids โ bevacizumab โ resection
3. CATARACTS โถ๏ธ surgical removal
4. OPTICAL neuropathy โถ๏ธ bevacizumab
ii. ๐ง Salivary
1. XEROSTOMIA โถ๏ธ saliva substitutes โ parasympathomimetic drugs โ hyperbaric O2 therapy
iii. ๐ฝ Esophageal
1. STRICTURE โถ๏ธ dilation โ H2B โ PPI
iv. ๐ซ Pulmonary
1. PNEUMONITIS โถ๏ธ steroids โ O2
2. FIBROSIS โถ๏ธ O2
v. โค๏ธ Cardiac
1. PERICARDITIS โถ๏ธ NSAIDs
2. VALVULAR disease โ CAD โถ๏ธ med_mm โ surgery
3. ARRHYTHMIAS โถ๏ธ HR control โ pacemaker
vi. ๐ฆ Intestinal
1. CHRONIC enteritis โถ๏ธ antiDiarr โ bile-acid sequestrants
2. CHRONIC proctitis โถ๏ธ sucralfate โ formalin enemas โ argon plasma coagulation โ hyperbaric oxygen therapy
3. FISTULA โถ๏ธ surgical repair
vii. ๐ฝ Urinary
1. IRRITATIVE โถ๏ธ antiMusc โ NSAIDs โ phenazopyridine
2. HEMORRHAGIC cystitis โถ๏ธ irrigation โ laser treatment โ alum โ hyperbaric O2 therapy โ formalin โ diversion
3. STRICTURE โถ๏ธ dilation โ surgical repair
viii. โฅ Sexual
1. ERECTILE dysfunction โถ๏ธ PDE5 โ โ mechanical aids โ other pharmacologic aids
2. VAGINAL stenosis โถ๏ธ dilators โ lubricants โ topEstrogens
ix. ๐ช Muscular or cutaneous ๐ฉน
1. ATROPHY โ FIBROSIS โถ๏ธ physical therapy โ botulinum toxin โ pentoxifylline โ tocopherol
2. LYMPHEDEMA โถ๏ธ compression
3. NECROSIS โถ๏ธ antibiotics โ dรฉbridement โ hyperbaric O2 therapy
5. RATIONALE.
a. Despite all TTOs, radiation carries its own risks.
6. SOURCE: [New England Journal of Medicine, Volume 394 โข Number 10 โข March 5, 2026](https://www.nejm.org/doi/full/10.1056/NEJMra2506017)
Monday, May 18, 2026 at 18:30:33 in BE
LH, TGA, RCH, BAR, DEPZ, ASCA, HIBN, AAQC
โณ TIME MANAGEMENT
01:01:41
Round: 7 01:07:26 Comments
Round: 6 23:43:83 Recap
Round: 5 14:46:79 Interpretation
Round: 4 02:44:07 REad + notes
Round: 3 10:14:52 ART methodology
Round: 2 03:37:07 ART selection
Round: 1 05:27:60 Past JR